About Human Protein Atlas
The Swedish Human Protein Atlas. Find a gene, then get its RNA specificity across tissues, single-cell types, cancers and blood cells with nTPM values, antibody-based protein evidence, subcellular location, secretome class and plasma concentration. CC BY 4.0.
Questions you can ask Human Protein Atlas
Type them into Kahubi’s chat once Human Protein Atlas is connected.
“In which tissues and cell types is ACE2 expressed, according to the Human Protein Atlas?”
What comes back: RNA tissue and single-cell specificity with nTPM values, protein evidence and subcellular location.
“Which secreted proteins are enriched in the liver and detectable in blood?”
What comes back: Genes with secretome class, tissue specificity and plasma concentration where measured.
Human Protein Atlas MCP tools
The 2 tools the Human Protein Atlas server offers to Kahubi. The assistant picks the right one for each question.
hpa_searchSearch the Human Protein Atlas by gene name, synonym, protein class or free text.
hpa_get_geneFull Human Protein Atlas summary for one Ensembl gene id (ENSG…): description, chromosome, disease involvement, RNA tissue/single-cell/cancer/brain/blood specificity with nTPM v...
Using Human Protein Atlas in Kahubi
- Hosted by Kahubi. Kahubi runs this server itself so it stays reliable enough for research use.
- Cited, checkable answers. Results are treated as retrieved material and cited with the source’s own identifiers, so you can open every record the answer relied on.
- Your files stay private. Only the search the assistant writes for your question is sent to Human Protein Atlas.
More life science sources
- TogoMCP (UniProt, ChEMBL, PubChem, PDB, Reactome, NCBI)One service across 30+ life-science databases: proteins, genes, compounds, structures, pathways, variants and MeSH.
- Open Targets PlatformTarget–disease–drug associations with the evidence behind them, from EMBL-EBI.
- Protein structures (PDB, AlphaFold)Search experimental and predicted protein structures, find similar folds, track ligands and fetch annotations.
- NCBI E-utilitiesGene, ClinVar, dbSNP, Taxonomy, Nucleotide, Protein, PMC and other NCBI databases.
- GBIF (biodiversity occurrences)2.5 billion species occurrence records from museums, surveys and citizen science worldwide.
- iNaturalistCitizen-science observations with photos, research-grade identifications and places.