About PRIDE Archive (proteomics datasets)
Search 40,000+ public proteomics projects by disease, tissue, organism, instrument or author, then read a project’s full metadata: sample and data-processing protocols, quantification, submitters, publications and data links.
Questions you can ask PRIDE Archive
Type them into Kahubi’s chat once PRIDE Archive is connected.
“Find public proteomics datasets on human cerebrospinal fluid in Alzheimer’s disease.”
What comes back: PRIDE projects with PXD accession, tissue, instrument, submission date and publication.
“Describe the sample preparation and quantification method used in PXD000561.”
What comes back: The project’s sample and data-processing protocols, quantification method and data links.
PRIDE Archive MCP tools
The 2 tools the PRIDE Archive server offers to Kahubi. The assistant picks the right one for each question.
pride_search_projectsSearch public proteomics datasets in PRIDE by keyword (disease, tissue, organism, method, author).
pride_get_projectFull metadata for one PRIDE project (PXD accession): description, sample and data processing protocols, organisms, tissues, diseases, instruments, quantification, submitters, la...
Using PRIDE Archive in Kahubi
- Hosted by Kahubi. Kahubi runs this server itself so it stays reliable enough for research use.
- Cited, checkable answers. Results are treated as retrieved material and cited with the source’s own identifiers, so you can open every record the answer relied on.
- Your files stay private. Only the search the assistant writes for your question is sent to PRIDE Archive.
More life science sources
- TogoMCP (UniProt, ChEMBL, PubChem, PDB, Reactome, NCBI)One service across 30+ life-science databases: proteins, genes, compounds, structures, pathways, variants and MeSH.
- Open Targets PlatformTarget–disease–drug associations with the evidence behind them, from EMBL-EBI.
- Protein structures (PDB, AlphaFold)Search experimental and predicted protein structures, find similar folds, track ligands and fetch annotations.
- NCBI E-utilitiesGene, ClinVar, dbSNP, Taxonomy, Nucleotide, Protein, PMC and other NCBI databases.
- GBIF (biodiversity occurrences)2.5 billion species occurrence records from museums, surveys and citizen science worldwide.
- iNaturalistCitizen-science observations with photos, research-grade identifications and places.